Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq4092 105 4e-20 seq394 105 4e-20 seq384 105 4e-20 seq239 105 4e-20 seq217 105 4e-20 seq8 105 4e-20 seq9 93.3 2e-16 seq4 91.5 8e-16 seq343 80.6 2e-12 seq3 78.8 5e-12 >seq4092 Length=58290 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 11515 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACACACGCTCATGCTCCACCTCC 11456 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| || || |||| || || |||||||||| Sbjct 11455 CCGGCG-GGGCGGG-CG-AG-ACGGGCCGGT 11429 >seq394 Length=12954 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 1636 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACACACGCTCATGCTCCACCTCC 1695 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| || || |||| || || |||||||||| Sbjct 1696 CCGGCG-GGGCGGG-CG-AG-ACGGGCCGGT 1722 >seq384 Length=13075 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 1750 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACACACGCTCATGCTCCACCTCC 1809 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| || || |||| || || |||||||||| Sbjct 1810 CCGGCG-GGGCGGG-CG-AG-ACGGGCCGGT 1836 >seq239 Length=15374 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 1545 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACACACGCTCATGCTCCACCTCC 1604 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| || || |||| || || |||||||||| Sbjct 1605 CCGGCG-GGGCGGG-CG-AG-ACGGGCCGGT 1631 >seq217 Length=15910 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 4582 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACACACGCTCATGCTCCACCTCC 4641 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| || || |||| || || |||||||||| Sbjct 4642 CCGGCG-GGGCGGG-CG-AG-ACGGGCCGGT 4668 >seq8 Length=312544902 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 79103235 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACACACGCTCATGCTCCACCTCC 79103176 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| || || |||| || || |||||||||| Sbjct 79103175 CCGGCG-GGGCGGG-CG-AG-ACGGGCCGGT 79103149 >seq9 Length=79335909 Score = 93.3 bits (102), Expect = 2e-16 Identities = 59/63 (94%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 31350159 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACA--CGCTCATGCTCCACCTCC 31350102 Query 897 CCG 899 ||| Sbjct 31350101 CCG 31350099 >seq4 Length=435153693 Score = 91.5 bits (100), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||| ||||||||||||| ||||||||| || ||||| |||||||||||| Sbjct 202863336 CTGCCCAGGCATAATTCACCATCTTTCAGGTCCTAACACACACGCTCATGCTCCACCTCC 202863277 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 || || || |||| || || |||||||||| Sbjct 202863276 CCAGCG-GGGCGGG-CG-AG-ACGGGCCGGT 202863250 Score = 89.7 bits (98), Expect = 3e-15 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| || | ||| |||||||||||| Sbjct 353518904 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACACACACTCATGCTCCACCTCC 353518963 Query 897 CCGACGCGG 905 ||| || || Sbjct 353518964 CCGGCGGGG 353518972 >seq343 Length=13557 Score = 80.6 bits (88), Expect = 2e-12 Identities = 78/91 (86%), Gaps = 7/91 (8%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCA-CCATCTTT-CGGGTCCTAACGCATGCGCTCGTGC-TCCACC 893 |||||||||||||||||| |||||||| ||||||||||| || ||||| ||| |||||| Sbjct 2210 CTGCCCAGGCATAGTTCACCCATCTTTCCGGGTCCTAACACACACGCTCATGCTTCCACC 2269 Query 894 TCCCCGACGCGGTCGGGTCGTAGTACGGGCC 924 |||||| || || |||| || || ||||||| Sbjct 2270 TCCCCGGCG-GGGCGGG-CG-AG-ACGGGCC 2296 >seq3 Length=527952102 Score = 78.8 bits (86), Expect = 5e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||| ||| ||| |||||||||| || ||||| |||||||| ||| Sbjct 144131001 CTGCCCAGGCATAGTTCATCATGTTTTGGGTCCTAACACACACGCTCATGCTCCACTTCC 144130942 Query 897 CCG 899 ||| Sbjct 144130941 CCG 144130939 Score = 75.2 bits (82), Expect = 6e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 || ||||||||||||||||||| |||||||||||||| || |||| |||||| ||||| Sbjct 128644740 CTACCCAGGCATAGTTCACCATTTTTCGGGTCCTAACACACACGCTTATGCTCCCCCTCC 128644681 Query 897 C 897 | Sbjct 128644680 C 128644680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860652017968