Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq38 190 2e-44 >seq38 Length=18080598 Score = 190 bits (210), Expect = 2e-44 Identities = 140/163 (86%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| || || || || |||| |||||||||||||||| || | | Sbjct 641410 AGGAGGTTTGAAATGGATCGAGAGTCTCAGTGTGCTCGATACTGTGCTGAGTGCAACAAG 641351 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 641350 ATGCATCCTGCTGAGGAAGGTGACTTCTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 641291 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || || ||||| ||||||||||||| | ||||| ||||||| Sbjct 641290 ACTTATTTTGCCATGATGGATGGAAAAATATATGACATCACAG 641248 Score = 104 bits (114), Expect = 2e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 ||||| |||||||| |||||||||||||| || |||||||||||||||||||| || | | Sbjct 640793 ACAGAATGGGCTGGGTGCCAGCGTGTGGGGATTTCCCCAGATACCCACAGAGTGCCCTAT 640734 Query 5240 CACATCTCATTTGGTTC 5256 |||||||||||||| || Sbjct 640733 CACATCTCATTTGGGTC 640717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117539761208