Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq38 196 4e-46 >seq38 Length=18080598 Score = 196 bits (216), Expect = 4e-46 Identities = 141/163 (87%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| || || || || |||| |||||||||||||||| || | | Sbjct 641410 AGGAGGTTTGAAATGGATCGAGAGTCTCAGTGTGCTCGATACTGTGCTGAGTGCAACAAG 641351 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 641350 ATGCATCCTGCTGAGGAAGGTGACTTCTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 641291 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || || ||||| ||||||||||||| | ||||| ||||||| Sbjct 641290 ACTTATTTTGCCATGATGGATGGAAAAATATATGACATCACAG 641248 Score = 104 bits (114), Expect = 2e-18 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 5165 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTAT 5224 ||||| |||||||| |||||||||||||| || |||||||||||||||||||| || ||| Sbjct 640793 ACAGAATGGGCTGGGTGCCAGCGTGTGGGGATTTCCCCAGATACCCACAGAGTGCCCTAT 640734 Query 5225 CACATCCCATTTGGTTCACGGATGCCAGGT 5254 |||||| ||||||| || || | || ||| Sbjct 640733 CACATCTCATTTGGGTCCAGGGTTCCCGGT 640704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210337771344