Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq38 196 4e-46
>seq38
Length=18080598
Score = 196 bits (216), Expect = 4e-46
Identities = 141/163 (87%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
||||||||||||||||| || || || || |||| |||||||||||||||| || | |
Sbjct 641410 AGGAGGTTTGAAATGGATCGAGAGTCTCAGTGTGCTCGATACTGTGCTGAGTGCAACAAG 641351
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 641350 ATGCATCCTGCTGAGGAAGGTGACTTCTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 641291
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
|| || ||||| ||||||||||||| | ||||| |||||||
Sbjct 641290 ACTTATTTTGCCATGATGGATGGAAAAATATATGACATCACAG 641248
Score = 104 bits (114), Expect = 2e-18
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 5165 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTAT 5224
||||| |||||||| |||||||||||||| || |||||||||||||||||||| || |||
Sbjct 640793 ACAGAATGGGCTGGGTGCCAGCGTGTGGGGATTTCCCCAGATACCCACAGAGTGCCCTAT 640734
Query 5225 CACATCCCATTTGGTTCACGGATGCCAGGT 5254
|||||| ||||||| || || | || |||
Sbjct 640733 CACATCTCATTTGGGTCCAGGGTTCCCGGT 640704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40210337771344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |