Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq27309 190 2e-44 >seq27309 Length=802758 Score = 190 bits (210), Expect = 2e-44 Identities = 140/163 (86%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| || || || ||| ||| |||||||||||||||| |||| Sbjct 469444 AGGAGGTTTGAAATGGATCGAGAGTCTCAGAATGCTCGATACTGTGCTGAGTGCAATAAA 469503 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct 469504 ATGCATTCTGCTGAGGAAGGTGACTTCTGGGCAGAGTCAAGCATGTTGGGTCTCAAAATC 469563 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || || ||||| ||||||||||||| || ||||| ||||||| Sbjct 469564 ACTTATTTTGCCATGATGGATGGAAAAGTATATGACATCACAG 469606 Score = 111 bits (122), Expect = 1e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||| |||||||| |||||||| ||||| ||||| |||||||||||||||||||| | || Sbjct 470023 CAGAATGGGCTGGGTGCCAGCGAGTGGGGATCTCTCCAGATACCCACAGAGTCCCCTATC 470082 Query 5241 ACATCTCATTTGGTTCACGGATGCCT 5266 ||||||||||||| || ||||| ||| Sbjct 470083 ACATCTCATTTGGGTCCCGGATTCCT 470108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40102163782632