Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq27309 196 4e-46 >seq27309 Length=802758 Score = 196 bits (216), Expect = 4e-46 Identities = 141/163 (87%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| || || || ||| ||| |||||||||||||||| |||| Sbjct 469444 AGGAGGTTTGAAATGGATCGAGAGTCTCAGAATGCTCGATACTGTGCTGAGTGCAATAAA 469503 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 469504 ATGCATTCTGCTGAGGAAGGTGACTTCTGGGCAGAGTCAAGCATGTTGGGTCTCAAAATC 469563 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || || ||||| ||||||||||||| || ||||| ||||||| Sbjct 469564 ACTTATTTTGCCATGATGGATGGAAAAGTATATGACATCACAG 469606 Score = 111 bits (122), Expect = 1e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||| |||||||| |||||||| ||||| ||||| |||||||||||||||||||| |||| Sbjct 470023 CAGAATGGGCTGGGTGCCAGCGAGTGGGGATCTCTCCAGATACCCACAGAGTCCCCTATC 470082 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGT 5254 ||||| ||||||| || ||||| || ||| Sbjct 470083 ACATCTCATTTGGGTCCCGGATTCCTGGT 470111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40194926225776