Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq237978 389 3e-104 seq262466 316 2e-82 seq255805 255 5e-64 >seq237978 Length=675583 Score = 389 bits (430), Expect = 3e-104 Identities = 244/263 (93%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 173205 ATGTGCAGCCAATGTCAGGGAAAGCACAGGAAGTTTGAAATGGACCGGGAACCTAAGAGT 173264 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 173265 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCAGAGGAAGGAGACTTTTGGGCA 173324 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 173325 GAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGATGTAT 173384 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | ||| ||||||||||||||||||||||||||| | ||||||||||||| |||||||||| Sbjct 173385 GCTATTACAGAGTGGGCTGGATGCCAGCGTGTGAGCATCTCCCCAGATATCCACAGAGTC 173444 Query 5234 CCTTGTCACATCTCATTTGGTTC 5256 | | ||||||||||||||| || Sbjct 173445 GCCTATCACATCTCATTTGGCTC 173467 >seq262466 Length=457418 Score = 316 bits (350), Expect = 2e-82 Identities = 234/272 (86%), Gaps = 1/272 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 || |||||| |||| ||||||||||||||||||||||||||| ||| |||| ||| |||| Sbjct 270104 ATATGCAGCTGATGTCAGGGAAAGCATAGGAGGTTTGAAATGAACCAGGAATCTACGAGT 270045 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||||||||||||||||||| ||||| | ||| || |||||||||||| Sbjct 270044 GCCAGATACTGTGCTGAGTGTAATAGGCTGTATCCTACAGAGTTTGGAGACTTTTGGGCA 269985 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 || | |||||||| ||||| | || | ||||||||| ||| |||||||||| |||||| Sbjct 269984 GACTGAAGCATGTTAGGCCTGAGGATTATCTACTTTGCACTGCTGGATGGAAA-GTGTAT 269926 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 ||| | ||||||||||||||||||| || ||||||| |||||||||||||||| |||||| Sbjct 269925 GATGTTACAGAGTGGGCTGGATGCCTGCATGTGGGACTCTCCCCAGATACCCATAGAGTC 269866 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | |||||||||||| ||||| |||| || Sbjct 269865 CCCTATCACATCTCATTGGGTTCTTGGATCCC 269834 >seq255805 Length=165345 Score = 255 bits (282), Expect = 5e-64 Identities = 155/164 (95%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 135784 TAGGAGGTTTGAAATGGACCGAGAACCTAAGAGTGCCAGATACTGCGCTGAGTGTAATAG 135725 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || || Sbjct 135724 GCTGCATCCTGCAGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTGAAGAT 135665 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||| |||||||||||||||||||||||||| |||| Sbjct 135664 CACCTACTTTGCACTGATGGATGGAAAGGTGTATGATATTACAG 135621 Score = 127 bits (140), Expect = 2e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || Sbjct 135529 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCATAGAGTCCCCTATC 135470 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||| || ||||| || Sbjct 135469 ACATCTCATTTGGCTCTCGGATCCC 135445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39996953780112