Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choloepus_20hoffmanni_20[genbank_20GCA_5F000164785.2_202014-09-30] 269,084 sequences; 3,286,013,499 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq237978 421 5e-114 seq262466 347 1e-91 seq255805 260 1e-65 >seq237978 Length=675583 Score = 421 bits (466), Expect = 5e-114 Identities = 274/301 (91%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| || ||| ||||||||||| |||| |||||||| Sbjct 173185 AAGAGGCAATGAATACTATGATGTGCAGCCAATGTCAGGGAAAGCACAGGAAGTTTGAAA 173244 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 173245 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCAG 173304 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 173305 AGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCAC 173364 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 |||||||||||||| |||||| ||| ||||||||||||||||||||||||||| | |||| Sbjct 173365 TGATGGATGGAAAGATGTATGCTATTACAGAGTGGGCTGGATGCCAGCGTGTGAGCATCT 173424 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 ||||||||| |||||||||| | ||||||||| ||||||| || | | | ||||| |||| Sbjct 173425 CCCCAGATATCCACAGAGTCGCCTATCACATCTCATTTGGCTCCCAGGTCCCAGGCACCA 173484 Query 5259 G 5259 | Sbjct 173485 G 173485 >seq262466 Length=457418 Score = 347 bits (384), Expect = 1e-91 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 4966 AATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCG 5025 ||||||||| ||||| |||| | |||| ||||||||||||||||||||||||||| ||| Sbjct 270117 AATGAATACTATGATATGCAGCTGATGTCAGGGAAAGCATAGGAGGTTTGAAATGAACCA 270058 Query 5026 GGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGG 5085 |||| ||| |||||||||||||||||||||||||||||||||| ||||| | ||| || Sbjct 270057 GGAATCTACGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGTATCCTACAGAGTTTGG 269998 Query 5086 TGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGA 5145 |||||||||||||| | ||||||||| ||||| | || | ||||||||| ||| |||| Sbjct 269997 AGACTTTTGGGCAGACTGAAGCATGTTAGGCCTGAGGATTATCTACTTTGCACTGCTGGA 269938 Query 5146 TGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGA 5205 |||||| ||||||||| | ||||||||||||||||||| || ||||||| |||||||||| Sbjct 269937 TGGAAA-GTGTATGATGTTACAGAGTGGGCTGGATGCCTGCATGTGGGACTCTCCCCAGA 269879 Query 5206 TACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||| |||||||| ||||||||| |||| ||||| |||| |||||| |||| Sbjct 269878 TACCCATAGAGTCCCCTATCACATCTCATTGGGTTCTTGGATCCCAGGTGCCAG 269825 >seq255805 Length=165345 Score = 260 bits (288), Expect = 1e-65 Identities = 156/164 (95%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 135784 TAGGAGGTTTGAAATGGACCGAGAACCTAAGAGTGCCAGATACTGCGCTGAGTGTAATAG 135725 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 |||||||||||| |||||||| |||||||||||||||||||||||||||||||| || || Sbjct 135724 GCTGCATCCTGCAGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTGAAGAT 135665 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||| |||||||||||||||||||||||||| |||| Sbjct 135664 CACCTACTTTGCACTGATGGATGGAAAGGTGTATGATATTACAG 135621 Score = 138 bits (152), Expect = 9e-29 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 135529 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCATAGAGTCCCCTATC 135470 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| ||||||| || ||||| ||||| ||||| Sbjct 135469 ACATCTCATTTGGCTCTCGGATCCCAGGCACCAG 135436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40089472856416