Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apteryx_20australis_20mantelli_20[genbank_20GCA_5F001039765.2_202015 -06-23] 326,828 sequences; 1,595,295,449 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value SEQ35289 136 3e-28 >SEQ35289 Length=3273 Score = 136 bits (150), Expect = 3e-28 Identities = 133/170 (78%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||| |||||||| |||||||| || || || ||| | ||||||||||| || | | Sbjct 2467 TAGAAGGTTTGAGATGGACCGTGACCCGCTCAGCGCCCGCTACTGTGCTGAATGCAGCAA 2526 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 |||||| || || |||||||| ||||| ||||| ||||| |||||| |||| || || || Sbjct 2527 GCTGCACCCCGCGGAGGAAGGCGACTTCTGGGCCGAGTCCAGCATGCTGGGGCTGAAGAT 2586 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5174 |||||||||||| ||||||| || ||| | || || ||||| | ||||| Sbjct 2587 CACCTACTTTGCCATGATGGACGGGAAGATCTACGACATCAC-GGGTGGG 2635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40063350856672