Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calidris_20pugnax_20[refseq_20GCF_5F001431845.1_202015-11-04] 3,753 sequences; 1,229,094,286 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq515 127 2e-25 >seq515 Length=247414 Score = 127 bits (140), Expect = 2e-25 Identities = 132/172 (77%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 5003 CATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAAT 5062 || |||||||| || ||||||||||| || || ||| | || |||||||||||| Sbjct 58282 CACAGGAGGTTCGAGATGGACCGGGACCCCCTGAACGCCCGGTATTGTGCTGAGTGTGGG 58223 Query 5063 AGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAA 5122 ||||||| || || ||||| || ||||||||||| || || ||| | ||||| | ||| Sbjct 58222 GGGCTGCACCCCGCCGAGGAGGGCGACTTTTGGGCCGAATCCAGCCTCTTGGGGTTGAAA 58163 Query 5123 ATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5174 ||||||||||| || ||||||| || ||| | || || ||||| | ||||| Sbjct 58162 ATCACCTACTTCGCCATGATGGACGGCAAGATCTACGACATCAC-GGGTGGG 58112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40209502232872