Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1895 107 2e-19 >seq1895 Length=15814 Score = 107 bits (118), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||| || |||||||| || || || || | ||||| || ||||| || Sbjct 3316 AGGAGGTTCGAGATGGACCGCGATCCGCTCAGCGCGCGCTACTGCGCCGAGTGCGGCCGG 3257 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| || || ||||| || ||| | ||||| ||||| ||| || |||| || || ||| Sbjct 3256 CTGCACCCCGCCGAGGAGGGAGACCTGTGGGCCGAGTCCAGCCTGCTGGGGCTGAAGATC 3197 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5174 |||||||| || ||||||| || ||||| || || ||||| | ||||| Sbjct 3196 ACCTACTTCGCCGTGATGGACGGCAAGGTCTACGACATCAC-GGGTGGG 3149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40195682598448