Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq2614 104 2e-18 >seq2614 Length=41520 Score = 104 bits (114), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||| || |||||||| || || | ||| | ||||| || ||||| | Sbjct 65 AGGAGGTTCGAGATGGACCGAGACCCCCTCAACGCCCGGTACTGCGCCGAGTGCGGCGTG 124 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| || || ||||| || ||||| ||||| ||||| ||| || |||| || || ||| Sbjct 125 CTGCACCCCGCCGAGGAGGGCGACTTCTGGGCCGAGTCCAGCCTGCTGGGGCTGAAGATC 184 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189 |||||||| || ||||||| || ||| | || || ||||| | ||||| Sbjct 185 ACCTACTTCGCCATGATGGACGGGAAGATCTACGACATCAC-GGGTGGG 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40111554647556