Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq159 107 2e-19 >seq159 Length=1898574 Score = 107 bits (118), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||| || |||||||| || || || || | ||||| || ||||| || Sbjct 251352 AGGAGGTTCGAGATGGACCGCGATCCGCTCAGCGCGCGCTACTGCGCCGAGTGCGGCCGG 251411 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| || || ||||| || ||| | ||||| ||||| ||| || |||| || || ||| Sbjct 251412 CTGCACCCCGCCGAGGAGGGAGACCTGTGGGCCGAGTCCAGCCTGCTGGGGCTGAAGATC 251471 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189 |||||||| || ||||||| || ||||| || || ||||| | ||||| Sbjct 251472 ACCTACTTCGCCGTGATGGACGGCAAGGTCTACGACATCAC-GGGTGGG 251519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40099277514492