Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1348 118 9e-23 >seq1348 Length=105407 Score = 118 bits (130), Expect = 9e-23 Identities = 130/172 (76%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 5018 CATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAAT 5077 || |||||||| || |||| ||||| || |||||| | ||||| || ||||| Sbjct 93969 CACAGGAGGTTCGAGCTGGAGCGGGACCCGCTGAGTGCGCGGTACTGCGCGGAGTGCGGG 93910 Query 5078 AGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAA 5137 ||||||| ||||||||||| || ||||| ||||| ||||| || | |||| || ||| Sbjct 93909 GGGCTGCACCCTGCTGAGGAGGGCGACTTCTGGGCCGAGTCCAGTCTCCTGGGACTGAAA 93850 Query 5138 ATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189 ||||||||| | || ||||||| || ||| | || || ||||||| ||||| Sbjct 93849 ATCACCTACCTGGCCATGATGGAGGGGAAGATCTACGACATCACAG-GTGGG 93799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40111664772564