Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq801 143 2e-30 >seq801 Length=1780026 Score = 143 bits (158), Expect = 2e-30 Identities = 134/169 (79%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||| |||||||| || || ||| ||| | || || |||||||| | | Sbjct 1000502 AGGAGGTTTGAGATGGACCGTGACCCGCTGAGCGCCCGCTATTGCGCTGAGTGCAGCCAG 1000561 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| ||||| ||||| || ||| | ||||||||||| ||| || |||| || || ||| Sbjct 1000562 CTGCACCCTGCCGAGGAGGGCGACCTGTGGGCAGAGTCCAGCCTGCTGGGGCTGAAGATC 1000621 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189 ||||||||||| |||||||||| ||||| ||||| || |||| ||||| Sbjct 1000622 ACCTACTTTGCTATGATGGATGGGAAGGTCTATGACATTACAG-GTGGG 1000669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117491920016