Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1820 89.7 4e-14 >seq1820 Length=43679 Score = 89.7 bits (98), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 5079 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAA 5138 ||||||| || || ||||| || ||||| ||||| ||||| ||| || |||| || || | Sbjct 43362 GGCTGCACCCCGCCGAGGAGGGCGACTTCTGGGCCGAGTCCAGCCTGCTGGGGCTGAAGA 43303 Query 5139 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189 |||||||||| || ||||||| || ||| | || || ||||| | ||||| Sbjct 43302 TCACCTACTTCGCCATGATGGAGGGGAAGATCTACGACATCAC-GGGTGGG 43253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40113078344388