Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq348135 132 4e-27 >seq348135 Length=696 Score = 132 bits (146), Expect = 4e-27 Identities = 132/170 (78%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||| ||||||||||| || ||| ||| | ||||| || ||||| | Sbjct 406 TAGGAGGTTTGAGATGGACCGGGACCCCCTGAGCGCCCGGTACTGCGCCGAGTGCGGCGG 347 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 || ||| ||||||||||| || ||||| ||||| ||||| ||| || || | || || || Sbjct 346 GCGGCACCCTGCTGAGGAGGGCGACTTCTGGGCCGAGTCCAGCCTGCTGAGGCTGAAGAT 287 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189 |||||||| || ||||||| || ||| | ||||| ||||||| ||||| Sbjct 286 CACCTACTACGCCATGATGGACGGGAAGATCTATGACATCACAG-GTGGG 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39771470118240