Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 136 3e-28
seq7393 134 1e-27
>seq1781
Length=149560735
Score = 136 bits (150), Expect = 3e-28
Identities = 185/260 (71%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||||||| |||||||| ||||| || ||||| || ||| ||| || || |
Sbjct 72269908 ATGTGCAGCAAGTGCCAGGGCAAGCACAGAAGGTTCGAGATGTACCATGAGCCCAC---- 72269853
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
|| ||| |||| || | ||||| | || ||||| || ||| | |||||
Sbjct 72269852 ------TATTGTTCTGAATGCAGCCAACTGCACGCCGCCGAGGAGGGCGACCTGTGGGCT 72269799
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
||||| ||| || |||| | || |||||||| ||||| || |||| || ||||| ||
Sbjct 72269798 GAGTCCAGCCTGCTGGGGATGAAGATCACCTATTTTGCCATGGTGGACGGCAAGGTCTAC 72269739
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
|| ||||||||||||||||| || ||||| |||| |||| ||| || |||||| | |||
Sbjct 72269738 GACATCACAGAGTGGGCTGGGTGTCAGCGCATGGGGATCTGCCCGGACACCCACTGTGTC 72269679
Query 5234 CCTTGTCACATCTCATTTGG 5253
| |||||||| || ||
Sbjct 72269678 CTCAACCACATCTCCTTCGG 72269659
>seq7393
Length=129908
Score = 134 bits (148), Expect = 1e-27
Identities = 132/169 (78%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
||||||||||| |||||||| || || ||| ||| | || ||||||||||| | | |
Sbjct 65563 AGGAGGTTTGAGATGGACCGCGACCCACTGAGCGCCCGCTATTGTGCTGAGTGCAGTCAG 65504
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
||||| || || ||||| || ||| | ||||| ||||| ||| || |||| || || |||
Sbjct 65503 CTGCACCCCGCCGAGGAGGGCGACCTGTGGGCTGAGTCCAGCCTGCTGGGGCTGAAGATC 65444
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189
||||||||||| ||||||| || ||||| || || ||||| | |||||
Sbjct 65443 ACCTACTTTGCCATGATGGACGGCAAGGTCTACGACATCAC-GGGTGGG 65396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40107804981300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |