Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1781 136 3e-28 seq7393 134 1e-27 >seq1781 Length=149560735 Score = 136 bits (150), Expect = 3e-28 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||| |||||||| ||||| || ||||| || ||| ||| || || | Sbjct 72269908 ATGTGCAGCAAGTGCCAGGGCAAGCACAGAAGGTTCGAGATGTACCATGAGCCCAC---- 72269853 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 || ||| |||| || | ||||| | || ||||| || ||| | ||||| Sbjct 72269852 ------TATTGTTCTGAATGCAGCCAACTGCACGCCGCCGAGGAGGGCGACCTGTGGGCT 72269799 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||| || |||| | || |||||||| ||||| || |||| || ||||| || Sbjct 72269798 GAGTCCAGCCTGCTGGGGATGAAGATCACCTATTTTGCCATGGTGGACGGCAAGGTCTAC 72269739 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||| || ||||| |||| |||| ||| || |||||| | ||| Sbjct 72269738 GACATCACAGAGTGGGCTGGGTGTCAGCGCATGGGGATCTGCCCGGACACCCACTGTGTC 72269679 Query 5234 CCTTGTCACATCTCATTTGG 5253 | |||||||| || || Sbjct 72269678 CTCAACCACATCTCCTTCGG 72269659 >seq7393 Length=129908 Score = 134 bits (148), Expect = 1e-27 Identities = 132/169 (78%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||| |||||||| || || ||| ||| | || ||||||||||| | | | Sbjct 65563 AGGAGGTTTGAGATGGACCGCGACCCACTGAGCGCCCGCTATTGTGCTGAGTGCAGTCAG 65504 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| || || ||||| || ||| | ||||| ||||| ||| || |||| || || ||| Sbjct 65503 CTGCACCCCGCCGAGGAGGGCGACCTGTGGGCTGAGTCCAGCCTGCTGGGGCTGAAGATC 65444 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189 ||||||||||| ||||||| || ||||| || || ||||| | ||||| Sbjct 65443 ACCTACTTTGCCATGATGGACGGCAAGGTCTACGACATCAC-GGGTGGG 65396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40107804981300