Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1781 140 3e-29 seq7393 134 1e-27 >seq1781 Length=149560735 Score = 140 bits (154), Expect = 3e-29 Identities = 193/272 (71%), Gaps = 10/272 (4%) Strand=Plus/Minus Query 4967 ATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGG 5026 ||||| || | |||||||| | |||||||| ||||| || ||||| || ||| ||| Sbjct 72269920 ATGAACACCACGATGTGCAGCAAGTGCCAGGGCAAGCACAGAAGGTTCGAGATGTACCAT 72269861 Query 5027 GAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGT 5086 || || | || ||| |||| || | ||||| | || ||||| || Sbjct 72269860 GAGCCCAC----------TATTGTTCTGAATGCAGCCAACTGCACGCCGCCGAGGAGGGC 72269811 Query 5087 GACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGAT 5146 ||| | ||||| ||||| ||| || |||| | || |||||||| ||||| || |||| Sbjct 72269810 GACCTGTGGGCTGAGTCCAGCCTGCTGGGGATGAAGATCACCTATTTTGCCATGGTGGAC 72269751 Query 5147 GGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGAT 5206 || ||||| || || ||||||||||||||||| || ||||| |||| |||| ||| || Sbjct 72269750 GGCAAGGTCTACGACATCACAGAGTGGGCTGGGTGTCAGCGCATGGGGATCTGCCCGGAC 72269691 Query 5207 ACCCACAGAGTCCCTTATCACATCCCATTTGG 5238 |||||| | |||| | |||||| | || || Sbjct 72269690 ACCCACTGTGTCCTCAACCACATCTCCTTCGG 72269659 >seq7393 Length=129908 Score = 134 bits (148), Expect = 1e-27 Identities = 132/169 (78%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||| |||||||| || || ||| ||| | || ||||||||||| | | | Sbjct 65563 AGGAGGTTTGAGATGGACCGCGACCCACTGAGCGCCCGCTATTGTGCTGAGTGCAGTCAG 65504 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| || || ||||| || ||| | ||||| ||||| ||| || |||| || || ||| Sbjct 65503 CTGCACCCCGCCGAGGAGGGCGACCTGTGGGCTGAGTCCAGCCTGCTGGGGCTGAAGATC 65444 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5174 ||||||||||| ||||||| || ||||| || || ||||| | ||||| Sbjct 65443 ACCTACTTTGCCATGATGGACGGCAAGGTCTACGACATCAC-GGGTGGG 65396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40200580473400