Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_002017.1 Length=1778 Score E Sequences producing significant alignments: (Bits) Value seq44614 223 4e-55 >seq44614 Length=456 Score = 223 bits (246), Expect = 4e-55 Identities = 261/350 (75%), Gaps = 2/350 (1%) Strand=Plus/Minus Query 1201 ACGGGATTACAAACAAGGTGAACTCTGTTATCGAGAAAATGAACATTCAATTCACAGCTG 1260 |||| |||||||| || || || || | || || |||||||||| ||||| |||| Sbjct 455 ACGGAATTACAAATAAAGTCAATTCCATCATTGACAAAATGAACACACAATTTGAGGCTG 396 Query 1261 TGGGTAAAGAATTCAACaaat-tagaaaaaaggatggaaaatttaaataaaaaaGTTGAT 1319 | | | ||||| ||||| | || | ||| || || ||| | || |||| | | || Sbjct 395 TTGACCACGAATTTT-CAAATCTGGAGAGAAGAATTGACAATCTGAACAAAAGAATGGAA 337 Query 1320 GATGGATTTCTGGACATTTGGACATATAATGCAGAATTGTTAGTTCTACTGGAAAATGAA 1379 || || ||||||||| |||||||||| ||||| |||||| | ||||| || ||||| ||| Sbjct 336 GACGGGTTTCTGGACGTTTGGACATACAATGCTGAATTGCTGGTTCTTCTTGAAAACGAA 277 Query 1380 AGGACTCTGGATTTCCATGACTCAAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAA 1439 || || || || | ||||| | ||||||||||| || ||||| ||||| ||| ||| Sbjct 276 AGAACACTAGACCTGCATGATGCGAATGTGAAGAACCTATATGAAAAAGTCAAATCGCAA 217 Query 1440 TTAAAGAATAATGCCAAAGAAATCGGAAATGGATGTTTTGAGTTCTACCACAAGTGTGAC 1499 |||| | | ||||| || || | |||||||| || ||||| |||| || || |||||| Sbjct 216 TTAAGGGACAATGCTAATGATCTAGGAAATGGGTGCTTTGAATTCTGGCATAAATGTGAC 157 Query 1500 AATGAATGCATGGAAAGTGTAAGAAATGGGACTTATGATTATCCCAAATA 1549 ||||| ||||| || ||| | |||||| || ||||| ||||||||||| Sbjct 156 AATGAGTGCATAGAGTCTGTCAAAAATGGTACCTATGACTATCCCAAATA 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5567085665344