Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20harrisi_20[genbank_20GCA_5F002173475.1_202017-06-06] 2,651 sequences; 1,202,994,831 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq2135 122 7e-24 >seq2135 Length=1629886 Score = 122 bits (134), Expect = 7e-24 Identities = 131/172 (76%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 5018 CATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAAT 5077 || ||||||||||| |||||||| || || || ||| | ||||| || |||||| Sbjct 633025 CACAGGAGGTTTGAGATGGACCGAGACCCCCTCAGCGCCCGCTACTGCGCCGAGTGTGGC 633084 Query 5078 AGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAA 5137 ||||||| || || ||||| || ||||| ||||| ||||| ||| || |||| || || Sbjct 633085 GGGCTGCACCCCGCCGAGGAGGGCGACTTCTGGGCCGAGTCCAGCCTGCTGGGGCTGAAG 633144 Query 5138 ATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5189 ||||||||||| || ||||||| || ||| | || || ||||| | ||||| Sbjct 633145 ATCACCTACTTCGCCATGATGGACGGGAAGATCTACGACATCAC-GGGTGGG 633195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117203518868