Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq7344 132 4e-27 seq207 132 4e-27 >seq7344 Length=28921 Score = 132 bits (146), Expect = 4e-27 Identities = 132/170 (78%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||| |||||||| || || || ||| | ||||| || ||||| | | Sbjct 5666 AGGAGGTTTGAGATGGACCGCGACCCGCTCAGCGCCCGCTACTGCGCCGAGTGCAGCCAG 5607 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| ||||| ||||| || ||| | ||||| ||||| ||| || |||| || || ||| Sbjct 5606 CTGCACCCTGCCGAGGAGGGCGACCTGTGGGCTGAGTCCAGCCTGCTGGGGCTGAAGATC 5547 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGC 5175 ||||||||||| ||||||| || ||||| || || ||||||| |||||| Sbjct 5546 ACCTACTTTGCCGTGATGGACGGCAAGGTCTACGACATCACAG-GTGGGC 5498 >seq207 Length=54678 Score = 132 bits (146), Expect = 4e-27 Identities = 132/170 (78%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||| |||||||| || || || ||| | ||||| || ||||| | | Sbjct 23044 AGGAGGTTTGAGATGGACCGCGACCCGCTCAGCGCCCGCTACTGCGCCGAGTGCAGCCAG 23103 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| ||||| ||||| || ||| | ||||| ||||| ||| || |||| || || ||| Sbjct 23104 CTGCACCCTGCCGAGGAGGGCGACCTGTGGGCTGAGTCCAGCCTGCTGGGGCTGAAGATC 23163 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGC 5175 ||||||||||| ||||||| || ||||| || || ||||||| |||||| Sbjct 23164 ACCTACTTTGCCGTGATGGACGGCAAGGTCTACGACATCACAG-GTGGGC 23212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40205687346064