Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq622 113 4e-21 >seq622 Length=1625445 Score = 113 bits (124), Expect = 4e-21 Identities = 129/172 (75%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 5003 CATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAAT 5062 || |||||||| || |||||||| || || || ||| | ||||| || ||||| Sbjct 629260 CACAGGAGGTTCGAGATGGACCGAGACCCCCTCAGCGCCCGCTACTGCGCCGAGTGCGGC 629319 Query 5063 AGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAA 5122 ||||||| || || ||||| || ||||| ||||| ||||| ||| || |||| || || Sbjct 629320 GGGCTGCACCCCGCCGAGGAGGGCGACTTCTGGGCCGAGTCCAGCCTGCTGGGGCTGAAG 629379 Query 5123 ATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGG 5174 ||||||||||| || ||||||| || || | ||||| ||||| | ||||| Sbjct 629380 ATCACCTACTTCGCCATGATGGACGGGAAAATCTATGACATCAC-GGGTGGG 629430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40201722270424