Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq3226 138 9e-29 >seq3226 Length=73054 Score = 138 bits (152), Expect = 9e-29 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 5025 GGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGC 5084 |||| || |||||||||| || ||||||| | ||||| || || ||| || ||||| Sbjct 61155 GGTTCGAGCTGGACCGGGACCCGCTGAGTGCCCGCTACTGCGCAGACTGTGGTACGCTGC 61096 Query 5085 ATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCT 5144 | ||||||||||| |||||||||||||| ||||| ||| || |||| || || ||||| | Sbjct 61095 ACCCTGCTGAGGAGGGTGACTTTTGGGCCGAGTCCAGCTTGCTGGGACTGAAGATCACTT 61036 Query 5145 ACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||| || ||||||| | ||||| ||||| ||||||| Sbjct 61035 ACTTCGCTGTGATGGACAGGAAGGTCTATGACATCACAG 60997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115198250792