Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq761 87.8 1e-14 seq563 82.4 4e-13 >seq761 Length=1290 Score = 87.8 bits (96), Expect = 1e-14 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||| |||| ||||||| | | | | ||| |||||||||||| Sbjct 710 CTGCCCAGGCATAGTTCACCATTTTTCAGGTCCTAGCACGTACACTCATGCTCCACCTCC 651 Query 897 CCGACGCGGTCGGGT 911 |||||| || ||||| Sbjct 650 CCGACG-GGGCGGGT 637 >seq563 Length=18600682 Score = 82.4 bits (90), Expect = 4e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||| ||||||||||||| ||| ||||| |||||| ||||| Sbjct 145762 CTGCCCAGGCATAGTTCACCACCTTTCGGGTCCTAGTACATACGCTCATGCTCCGCCTCC 145703 Query 897 CCGAC 901 || || Sbjct 145702 CCAAC 145698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860590712812