Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq107 96.9 2e-17 seq339 91.5 8e-16 seq63 91.5 8e-16 seq29 91.5 8e-16 seq405 89.7 3e-15 seq743 80.6 2e-12 seq165 75.2 6e-11 >seq107 Length=3702910 Score = 96.9 bits (106), Expect = 2e-17 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||| |||||||||||| | | | ||||| |||||||||||| Sbjct 527053 CTGCCCAGGCATAGTTCACCATTTTTCGGGTCCTAGCACGTACGCTCATGCTCCACCTCC 527112 Query 897 CCGACGCGGTCGGGT 911 |||||| || ||||| Sbjct 527113 CCGACG-GGGCGGGT 527126 >seq339 Length=2145283 Score = 91.5 bits (100), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | | ||||| ||| || || || Sbjct 709737 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGTACGCTCATGCCCCCCCCCC 709796 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| || |||| || || |||||||||| Sbjct 709797 CCGACG-GGGCGGG-CG-AG-ACGGGCCGGT 709823 >seq63 Length=4393237 Score = 91.5 bits (100), Expect = 8e-16 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||| Sbjct 2557491 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGTACGTACGCTCATGCTCCACCTCC 2557550 Query 897 CCGACGCGGTCGG 909 ||||| ||| || Sbjct 2557551 CCGACAGGGTGGG 2557563 >seq29 Length=5344911 Score = 91.5 bits (100), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||| | | | |||| |||||||||||| Sbjct 4440123 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAGCACGTAAGCTCATGCTCCACCTCC 4440064 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||| || |||| || || |||||||||| Sbjct 4440063 CCGAC-AGGGCGGG-CG-AG-ACGGGCCGGT 4440037 >seq405 Length=1880284 Score = 89.7 bits (98), Expect = 3e-15 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | || | | |||||||||||| Sbjct 608142 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGTGTACACATGCTCCACCTCC 608201 Query 897 CCGACGCGG 905 |||||| || Sbjct 608202 CCGACGGGG 608210 >seq743 Length=1054728 Score = 80.6 bits (88), Expect = 2e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||| | | | ||||| |||||||| || Sbjct 8816 CTGCCCAGGCATAGTTCACCATCTTTGGGGTCCTAGCACGTACGCTCATGCTCCACTTCT 8875 Query 897 CCGACGCGG 905 | |||| || Sbjct 8876 CTGACGGGG 8884 >seq165 Length=3102812 Score = 75.2 bits (82), Expect = 6e-11 Identities = 56/64 (88%), Gaps = 4/64 (6%) Strand=Plus/Plus Query 838 TGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATG--CGCTCGTGCTCCACCTC 895 |||||||||||||||||||||||||| |||| | ||||| ||||| ||||||||||| Sbjct 1781042 TGCCCAGGCATAGTTCACCATCTTTCAGGTC--ACAGCATGTACGCTCATGCTCCACCTC 1781099 Query 896 CCCG 899 |||| Sbjct 1781100 CCCG 1781103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860525129866