Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq283530 136 3e-28 >seq283530 Length=2431719 Score = 136 bits (150), Expect = 3e-28 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||| |||||||| || || | || | ||||| | |||||| | Sbjct 189993 TAGGAGGTTTGAGATGGACCGAGAGCCGCTCAACGCTCGCTACTGCGGGGAGTGTGGCAA 189934 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 |||||| ||||| ||||| || ||| | ||||| ||||| |||||| |||| || ||||| Sbjct 189933 GCTGCACCCTGCCGAGGAGGGGGACCTCTGGGCCGAGTCAAGCATGCTGGGGCTGAAAAT 189874 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG--AGTGGG 5189 ||||||||| || ||||||||||| || || ||||| ||||||| |||||| Sbjct 189873 CACCTACTTCGCCCTGATGGATGGGAAAGTTTATGACATCACAGGTAGTGGG 189822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39989039222160