Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq9502 105 4e-20 seq6186 105 4e-20 seq431 86.0 4e-14 seq180 78.8 5e-12 >seq9502 Length=473 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | | ||||| |||||||||||| Sbjct 457 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGTACGCTCATGCTCCACCTCC 398 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| || |||| || || |||||||||| Sbjct 397 CCGACG-GGGCGGG-CG-AG-ACGGGCCGGT 371 >seq6186 Length=1201 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | | ||||| |||||||||||| Sbjct 372 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGTACGCTCATGCTCCACCTCC 313 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| || |||| || || |||||||||| Sbjct 312 CCGACG-GGGCGGG-CG-AG-ACGGGCCGGT 286 >seq431 Length=435080 Score = 86.0 bits (94), Expect = 4e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| || | | ||||| |||||||||||| Sbjct 146184 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCAAAACGTACGCTCATGCTCCACCTCC 146243 Query 897 CC 898 || Sbjct 146244 CC 146245 >seq180 Length=2213635 Score = 78.8 bits (86), Expect = 5e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCT 894 ||||||||||||||||| ||||||||||||||||| | ||| | ||| |||||||||| Sbjct 1905536 CTGCCCAGGCATAGTTCGCCATCTTTCGGGTCCTAGCACATACACTCATGCTCCACCT 1905593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2858481290310