Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crocodylus_20porosus_20[refseq_20GCF_5F001723895.1_202016-09-13] 70 sequences; 2,049,536,252 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-18 seq24 95.1 7e-17 seq25 87.8 1e-14 >seq1 Length=270692262 Score = 100 bits (110), Expect = 2e-18 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||| Sbjct 216756438 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACATACGCTCATGCTCCACTTCC 216756379 Query 897 CCGACGCGGTCGGGT 911 |||||| || ||||| Sbjct 216756378 CCGACG-GGGCGGGT 216756365 >seq24 Length=75875076 Score = 95.1 bits (104), Expect = 7e-17 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||| Sbjct 40358948 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACATACGCTAATGCTCCACCTCC 40358889 Query 897 CCGAC 901 ||||| Sbjct 40358888 CCGAC 40358884 >seq25 Length=45393205 Score = 87.8 bits (96), Expect = 1e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||| | | | || || |||||||| ||| Sbjct 41952178 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAGCACGTACGTTCATGCTCCACTTCC 41952119 Query 897 CCGACGCGGTCGG 909 |||||| ||| || Sbjct 41952118 CCGACGGGGTGGG 41952106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860797934860