Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq54480 95.1 7e-17 seq17543 91.5 8e-16 seq51124 86.0 4e-14 >seq54480 Length=4469 Score = 95.1 bits (104), Expect = 7e-17 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||| Sbjct 564 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGCGCGCTCACGCTCCACCTCC 623 Query 897 CCGACGCGGTCGGG 910 |||||| || |||| Sbjct 624 CCGACG-GGGCGGG 636 >seq17543 Length=17490 Score = 91.5 bits (100), Expect = 8e-16 Identities = 64/71 (90%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTA--ACGCATGCGCTCGTGCTCCACCT 894 |||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||| Sbjct 15368 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAGCACGCA--CGCTCATGCTCCACCT 15311 Query 895 CCCCGACGCGG 905 |||||||| || Sbjct 15310 CCCCGACGGGG 15300 >seq51124 Length=11048 Score = 86.0 bits (94), Expect = 4e-14 Identities = 65/75 (87%), Gaps = 4/75 (5%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCG--CTCGTGCTCCACCT 894 |||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||| Sbjct 336 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTG--GCATGCGTGCTCACGCTCCACCT 279 Query 895 CCCCGACGCGGTCGG 909 |||||||| ||| || Sbjct 278 CCCCGACGGGGTGGG 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2855310621864