Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_030690.1 Length=8930 Score E Sequences producing significant alignments: (Bits) Value seq893 89.7 3e-14 >seq893 Length=78420 Score = 89.7 bits (98), Expect = 3e-14 Identities = 229/342 (67%), Gaps = 12/342 (4%) Strand=Plus/Plus Query 633 TCAACCATGGGTT-GGATCCTTAGTCTTATCTTTAATTACTACAGACTTTGAATCACCCG 691 ||||||||||| | ||| || | ||| | ||| | || ||| ||||| ||||||| Sbjct 48195 TCAACCATGGGCTAGGAATCTAATTCTGAG-TTTGTTGACCACAATTTTTGAGTCACCCG 48253 Query 692 GGAAAGAATTCATGGATCAG--ATCAAGCTGGTTGCCAGTTATGCACAAATGACAACATA 749 ||||||| | |||| ||| ||||| || |||| ||||||| |||||||| || Sbjct 48254 GGAAAGAGATGATGGCACAGCTATCAA--TGATTGCGGAGCATGCACAGATGACAACGTA 48311 Query 750 CACTACAATCAAAGAGTACCTTAGTGAATGCATGGATGCAACACTAACGATTCCCGCAGT 809 | | |||||||| || || | ||||||||||||||||| || | | || || || Sbjct 48312 CTCCACAATCAATTCATATCTCAACCAATGCATGGATGCAACAATAGCTCTCCCTGCTGT 48371 Query 810 AGCATATGAGATCAAGGAGTTCATTAAGACT---TCGTCAGATCTTAAGAATGAACATGG 866 | | || || |||| || |||| | |||| || || || | | ||| Sbjct 48372 TGTGAAGGAAATTGAGGAATT-TGAAAGAGTAACTCGT--GACCTCAAAATTAAACTCAA 48428 Query 867 AGAGTTATTCAAGTACTTGGGTGCGATTAGGYATCCTGATGCAATCAAATTAGCTCCGCG 926 | |||| |||||||| || || || || |||| |||| ||| || ||||||| Sbjct 48429 AAAGTTGTTCAAGTATGCTGGAGCAATAAGACATCCAGATGTAATTCAAATAGCTCCTAA 48488 Query 927 AAACTTTCCAAATCTTGCGTCAGCTGCATTTTACTGGAGCAA 968 | |||||||| | || | ||||| || | ||||| || Sbjct 48489 AGCTTTTCCAAACTTGGCAACTGCTGCCCTTAATTGGAGTAA 48530 Lambda K H 0.635 0.409 0.915 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28401224003488