Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_030885.1 Length=8970 Score E Sequences producing significant alignments: (Bits) Value seq893 93.3 2e-15 >seq893 Length=78420 Score = 93.3 bits (102), Expect = 2e-15 Identities = 272/415 (66%), Gaps = 12/415 (3%) Strand=Plus/Plus Query 582 ACCCACTCATGGAGAGACAGCTACTCTGCTTCAAATGTTTAACCCGCATGAGGCAATAGA 641 ||| || |||| |||| |||| | | |||||| | || || || |||||||| Sbjct 48125 ACCAACACATGCAGAGGCAGCAAATGCTCTTCAACTCTTCCCTCCAACTGCAGCAATAGA 48184 Query 642 CTGGATCAATGCTCAGCCCTGGG-TCGG---CTCATT-TGTTTTAGCACTATTGACCACT 696 | |||||| |||| || |||| | || || ||| || || | |||||||| Sbjct 48185 C--GATCAACTCTCAACCATGGGCTAGGAATCTAATTCTGAGTTTG-----TTGACCACA 48237 Query 697 GATTTTGAGCCGCCTGGAAAGGAGTTTATGGACCAAATTAAACTTGTTGCCGCTTACGCT 756 ||||||| | || || || ||| | |||| || | | | |||| | | || Sbjct 48238 ATTTTTGAGTCACCCGGGAAAGAGATGATGGCACAGCTATCAATGATTGCGGAGCATGCA 48297 Query 757 CAAATGACACCATACACAACAATTAAGGAATACCTAAATGAGTGCATGGATGCCACCATA 816 || |||||| | ||| | ||||| || ||| || || | ||||||||||| || ||| Sbjct 48298 CAGATGACAACGTACTCCACAATCAATTCATATCTCAACCAATGCATGGATGCAACAATA 48357 Query 817 ACCATCCCTGCAGTTGTATATGAGATACGAGATTTTCTTAAGGTCACTTCTGAGCTTAAA 876 | ||||||| ||||| | || || || ||| | || ||| ||| || ||| Sbjct 48358 GCTCTCCCTGCTGTTGTGAAGGAAATTGAGGAATTTGAAAGAGTAACTCGTGACCTCAAA 48417 Query 877 GCTGATCATGGAGATTTGTTTAAGTACTTGGGAGCTATTCGCCATGCAGATGCAATCAAG 936 | | | | | ||||| ||||| ||||| || | ||| |||||| ||| | Sbjct 48418 ATTAAACTCAAAAAGTTGTTCAAGTATGCTGGAGCAATAAGACATCCAGATGTAATTCAA 48477 Query 937 TTAGCTCCAAGAAATTTCCCAAACTTGGCATCGGCAGCTTTTTATTGGAGCAAGA 991 ||||||| | | ||| |||||||||||| | || || || ||||||| |||| Sbjct 48478 ATAGCTCCTAAAGCTTTTCCAAACTTGGCAACTGCTGCCCTTAATTGGAGTAAGA 48532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28528956065568