Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq935 100 2e-18 seq223282 87.8 1e-14 >seq935 Length=7348 Score = 100 bits (110), Expect = 2e-18 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||| Sbjct 6085 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGCGCGCTCACGCTCCACCTCC 6026 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| || |||| || || |||||||||| Sbjct 6025 CCGACG-GGGCGGG-CG-AG-ACGGGCCGGT 5999 >seq223282 Length=1528 Score = 87.8 bits (96), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTA--ACGCATGCGCTCGTGCTCCACCT 894 |||||||| |||||||||||||||||| ||||||| ||||| ||||| |||||||||| Sbjct 1394 CTGCCCAGCCATAGTTCACCATCTTTCAGGTCCTAGCACGCA--CGCTCATGCTCCACCT 1337 Query 895 CCCCGACGCGG 905 |||||||| || Sbjct 1336 CCCCGACGGGG 1326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2846834343240