Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_030690.1 Length=8930 Score E Sequences producing significant alignments: (Bits) Value seq172860 84.2 1e-12 >seq172860 Length=3720 Score = 84.2 bits (92), Expect = 1e-12 Identities = 228/342 (67%), Gaps = 12/342 (4%) Strand=Plus/Minus Query 633 TCAACCATGGGTT-GGATCCTTAGTCTTATCTTTAATTACTACAGACTTTGAATCACCCG 691 ||||||||||| | ||| || | ||| ||| | || ||| ||||| ||||||| Sbjct 3244 TCAACCATGGGCTAGGAATCTAATTCTGGG-TTTGTTGACCACAACTTTTGAGTCACCCG 3186 Query 692 GGAAAGAATTCATGGATCAG--ATCAAGCTGGTTGCCAGTTATGCACAAATGACAACATA 749 ||||||| | |||| ||| ||||| || |||| ||||||| |||||||| || Sbjct 3185 GGAAAGAGATGATGGCACAGCTATCAA--TGATTGCGGAGCATGCACAGATGACAACCTA 3128 Query 750 CACTACAATCAAAGAGTACCTTAGTGAATGCATGGATGCAACACTAACGATTCCCGCAGT 809 | | |||||||| || || | ||||||||||||||||| || | | || || || Sbjct 3127 CTCCACAATCAATTCATATCTCAACCAATGCATGGATGCAACAATAGCTCTCCCTGCTGT 3068 Query 810 AGCATATGAGATCAAGGAGTTCATTAAGACT---TCGTCAGATCTTAAGAATGAACATGG 866 | | || || |||| || |||| | |||| || || || | | ||| Sbjct 3067 TGTGAAGGAAATTGAGGAATT-TGAAAGAGTAACTCGT--GACCTCAAAATTAAACTCAA 3011 Query 867 AGAGTTATTCAAGTACTTGGGTGCGATTAGGYATCCTGATGCAATCAAATTAGCTCCGCG 926 | |||| |||||||| || || || || |||| |||| ||| || ||||||| Sbjct 3010 AAAGTTGTTCAAGTATGCTGGAGCAATAAGACATCCAGATGTAATTCAAATAGCTCCTAA 2951 Query 927 AAACTTTCCAAATCTTGCGTCAGCTGCATTTTACTGGAGCAA 968 | |||||||| | || | ||||| || | ||||| || Sbjct 2950 AGCTTTTCCAAACTTGGCAACTGCTGCCCTTAATTGGAGTAA 2909 Lambda K H 0.635 0.409 0.915 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28309231298080