Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20pyrrhus_20[genbank_20GCA_5F000737285.1_202014-08-01] 473,380 sequences; 1,126,791,715 total letters Query= NC_030885.1 Length=8970 Score E Sequences producing significant alignments: (Bits) Value seq172860 89.7 3e-14 SEQ72142 82.4 4e-12 >seq172860 Length=3720 Score = 89.7 bits (98), Expect = 3e-14 Identities = 202/304 (66%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 688 TTGACCACTGATTTTGAGCCGCCTGGAAAGGAGTTTATGGACCAAATTAAACTTGTTGCC 747 |||||||| ||||||| | || || || ||| | |||| || | | | |||| Sbjct 3210 TTGACCACAACTTTTGAGTCACCCGGGAAAGAGATGATGGCACAGCTATCAATGATTGCG 3151 Query 748 GCTTACGCTCAAATGACACCATACACAACAATTAAGGAATACCTAAATGAGTGCATGGAT 807 | | || || |||||| | ||| | ||||| || ||| || || | ||||||||| Sbjct 3150 GAGCATGCACAGATGACAACCTACTCCACAATCAATTCATATCTCAACCAATGCATGGAT 3091 Query 808 GCCACCATAACCATCCCTGCAGTTGTATATGAGATACGAGATTTTCTTAAGGTCACTTCT 867 || || ||| | ||||||| ||||| | || || || ||| | || ||| | Sbjct 3090 GCAACAATAGCTCTCCCTGCTGTTGTGAAGGAAATTGAGGAATTTGAAAGAGTAACTCGT 3031 Query 868 GAGCTTAAAGCTGATCATGGAGATTTGTTTAAGTACTTGGGAGCTATTCGCCATGCAGAT 927 || || ||| | | | | | ||||| ||||| ||||| || | ||| ||||| Sbjct 3030 GACCTCAAAATTAAACTCAAAAAGTTGTTCAAGTATGCTGGAGCAATAAGACATCCAGAT 2971 Query 928 GCAATCAAGTTAGCTCCAAGAAATTTCCCAAACTTGGCATCGGCAGCTTTTTATTGGAGC 987 | ||| | ||||||| | | ||| |||||||||||| | || || || ||||||| Sbjct 2970 GTAATTCAAATAGCTCCTAAAGCTTTTCCAAACTTGGCAACTGCTGCCCTTAATTGGAGT 2911 Query 988 AAGA 991 |||| Sbjct 2910 AAGA 2907 >SEQ72142 Length=1549 Score = 82.4 bits (90), Expect = 4e-12 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 709 CCTGGAAAGGAGTTTATGGACCAAATTAAACTTGTTGCCGCTTACGCTCAAATGACACCA 768 ||||||||||| | ||||||||| || | | ||||| | ||| |||||||||||| || Sbjct 810 CCTGGAAAGGAAATGATGGACCAAGTTCATTTAGTTGCAGGTTATGCTCAAATGACAACA 751 Query 769 TACACAACAATTAAGGAATACCTAAATGAGTGCATGGATGCCACCATAACCATCCCTGCA 828 ||| |||| || ||| || | | | || ||||||| |||||| || | ||||| Sbjct 750 TACTCAACCATCCAGGCTTATTTGGAACACTGTATGGATGGAACCATAGCCTTACCTGCT 691 Query 829 GTTGT 833 ||||| Sbjct 690 GTTGT 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28436549630880