Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq43 105 4e-20 seq70 86.0 4e-14 seq40 82.4 4e-13 seq38 80.6 2e-12 seq78 78.8 5e-12 >seq43 Length=53437206 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | | ||||| |||||||||||| Sbjct 22239800 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGTACGCTCATGCTCCACCTCC 22239859 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| || |||| || || |||||||||| Sbjct 22239860 CCGACG-GGGCGGG-CG-AG-ACGGGCCGGT 22239886 >seq70 Length=183555969 Score = 86.0 bits (94), Expect = 4e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | ||| |||| | ||||||||| Sbjct 139269588 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACATACGCTAATCTTCCACCTCC 139269647 Query 897 CCGAC 901 ||||| Sbjct 139269648 CCGAC 139269652 >seq40 Length=78824398 Score = 82.4 bits (90), Expect = 4e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||| | | | |||| |||||| ||||| Sbjct 38053623 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAGCACGTATGCTCATGCTCCGCCTCC 38053682 Query 897 CCGACGCGGTCGG 909 | |||| ||| || Sbjct 38053683 CTGACGGGGTGGG 38053695 >seq38 Length=209695328 Score = 80.6 bits (88), Expect = 2e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| |||||||||||||||||||| |||||||| | ||| |||||| ||||||||| Sbjct 120586271 CTGCATAGGCATAGTTCACCATCTTTGGGGTCCTAGCACATATGCTCGTACTCCACCTCA 120586212 Query 897 CCGACGCGG 905 | ||||||| Sbjct 120586211 CTGACGCGG 120586203 >seq78 Length=264820526 Score = 78.8 bits (86), Expect = 5e-12 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||| ||||||||||| ||||| |||||||| | | | ||||| |||||||||||| Sbjct 105046971 CTGCCCAGACATAGTTCACCCTCTTTTGGGTCCTAGCACGTACGCTCATGCTCCACCTCC 105046912 Query 897 CCGACGCGGTCGG 909 | ||| ||| || Sbjct 105046911 CTGACAGGGTGGG 105046899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860797610338