Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq867415 136 3e-28 seq95547 82.4 6e-12 >seq867415 Length=1054 Score = 136 bits (150), Expect = 3e-28 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||| ||||| || || || | || | |||||||||| || |||| || Sbjct 538 AGGAGGTTTGAGATGGATCGTGACCCATTGGATGGCCGATACTGTGCAGAATGTAGTAAA 479 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 | ||| | ||||||||||||||||| ||||| || || |||||| |||| | || ||| Sbjct 478 TTCCATGCAGCTGAGGAAGGTGACTTCTGGGCGGAATCCAGCATGCTGGGATTGAAGATC 419 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||| |||||||||| ||||| ||||| ||||||| Sbjct 418 ACATACTTTGCCATGATGGATGGGAAGGTTTATGACATCACAG 376 >seq95547 Length=4398 Score = 82.4 bits (90), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 5158 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5217 |||||| |||| |||||||| ||||| || ||||||||||| |||||||| || |||| Sbjct 2583 TGATATG-CAGAATGGGCTGGTTGCCAACGAGTGGGAATCTCTCCAGATACGCATCGAGT 2525 Query 5218 CCCTTATCACATCCCATTTGGTTCA 5242 || ||||||||| | ||||| ||| Sbjct 2524 TCCCTATCACATCTCTTTTGGATCA 2500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39811335806080