Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq867415 136 3e-28
seq95547 82.4 6e-12
>seq867415
Length=1054
Score = 136 bits (150), Expect = 3e-28
Identities = 128/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
||||||||||| ||||| || || || | || | |||||||||| || |||| ||
Sbjct 538 AGGAGGTTTGAGATGGATCGTGACCCATTGGATGGCCGATACTGTGCAGAATGTAGTAAA 479
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
| ||| | ||||||||||||||||| ||||| || || |||||| |||| | || |||
Sbjct 478 TTCCATGCAGCTGAGGAAGGTGACTTCTGGGCGGAATCCAGCATGCTGGGATTGAAGATC 419
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
|| |||||||| |||||||||| ||||| ||||| |||||||
Sbjct 418 ACATACTTTGCCATGATGGATGGGAAGGTTTATGACATCACAG 376
>seq95547
Length=4398
Score = 82.4 bits (90), Expect = 6e-12
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 5158 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5217
|||||| |||| |||||||| ||||| || ||||||||||| |||||||| || ||||
Sbjct 2583 TGATATG-CAGAATGGGCTGGTTGCCAACGAGTGGGAATCTCTCCAGATACGCATCGAGT 2525
Query 5218 CCCTTATCACATCCCATTTGGTTCA 5242
|| ||||||||| | ||||| |||
Sbjct 2524 TCCCTATCACATCTCTTTTGGATCA 2500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 39811335806080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |