Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq6237 134 1e-27 >seq6237 Length=3891599 Score = 134 bits (148), Expect = 1e-27 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||| |||||||| || || | || | ||||| | ||||| | Sbjct 3000364 TAGGAGGTTTGAGATGGACCGAGAGCCCCTCAACGCTCGCTACTGCGGGGAGTGCGGCAA 3000305 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 |||||| ||||| ||||| || ||| | ||||| |||||||||||| |||| || ||||| Sbjct 3000304 GCTGCACCCTGCCGAGGACGGGGACCTCTGGGCCGAGTCGAGCATGCTGGGGCTGAAAAT 3000245 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||| || ||||||||||| || || ||||| ||||||| Sbjct 3000244 CACCTACTTCGCCCTGATGGATGGGAAAGTTTATGACATCACAG 3000201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40109416687872