Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq548 141 7e-30 >seq548 Length=737385 Score = 141 bits (156), Expect = 7e-30 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||| |||||||| || || | || | |||||||||| || |||| | Sbjct 211803 AGGAGGTTTGAGATGGACCGTGACCCGTTGTATGGCCGATACTGTGCAGAATGTAGCAAA 211862 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 | ||| | ||||||||||||||||| ||||| || || |||||| |||| | || ||| Sbjct 211863 TTTCATGCAGCTGAGGAAGGTGACTTCTGGGCGGAATCCAGCATGCTGGGATTGAAGATC 211922 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||| |||||||||||||||| ||||| ||||||| Sbjct 211923 ACGTACTTTGCCATGATGGATGGAAAGGTCTATGACATCACAG 211965 Score = 80.6 bits (88), Expect = 2e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||| |||||||| |||||| | ||||||||||| |||||||| || |||| || | || Sbjct 214807 CAGAATGGGCTGGCTGCCAGAGAGTGGGAATCTCTCCAGATACACATCGAGTTCCCTATC 214866 Query 5241 ACATCTCATTTGGTTCA 5257 ||||||| ||||| ||| Sbjct 214867 ACATCTCTTTTGGATCA 214883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40094804363040