Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq161 100 2e-18 seq551 91.5 8e-16 seq197 89.7 3e-15 >seq161 Length=187407 Score = 100 bits (110), Expect = 2e-18 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||| Sbjct 169758 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGCGCGCTCACGCTCCACCTCC 169817 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| || |||| || || |||||||||| Sbjct 169818 CCGACG-GGGCGGG-CG-AG-ACGGGCCGGT 169844 >seq551 Length=436750 Score = 91.5 bits (100), Expect = 8e-16 Identities = 77/91 (85%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||| ||||||||||||||||||||||||||| | | |||||| |||||||||||| Sbjct 321984 CTGCCCATGCATAGTTCACCATCTTTCGGGTCCTAGCACGCGCGCTCATGCTCCACCTCC 321925 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||| || | ||| || |||||||||| Sbjct 321924 CCGAC-AGGGCAGGT--GAG-ACGGGCCGGT 321898 >seq197 Length=772719 Score = 89.7 bits (98), Expect = 3e-15 Identities = 66/75 (88%), Gaps = 4/75 (5%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTA--ACGCATGCGCTCGTGCTCCACCT 894 |||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||| Sbjct 312855 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAGTACGC--GCGCTCACGCTCCACCT 312798 Query 895 CCCCGACGCGGTCGG 909 |||||||| ||| || Sbjct 312797 CCCCGACGGGGTGGG 312783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859257635440