Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq598 127 2e-25 >seq598 Length=658777 Score = 127 bits (140), Expect = 2e-25 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||| || ||||| || || || | || | |||||||||| || |||| || Sbjct 634098 AGGAGGTTCGAGATGGATCGTGACCCCTTGGATGGCCGATACTGTGCAGAATGTAGTAAA 634157 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 | ||| | ||||||||||||||||| |||||||| || || ||| |||| | || ||| Sbjct 634158 TTTCATGCAGCTGAGGAAGGTGACTTCTGGGCAGAATCCAGTATGCTGGGATTGAAGATC 634217 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||| |||||||||| ||||| ||||| || |||| Sbjct 634218 ACATACTTTGCCATGATGGATGGGAAGGTTTATGACATTACAG 634260 Score = 82.4 bits (90), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 5158 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5217 |||||| |||| |||||||| |||||||| ||||||||||| |||||||| || |||| Sbjct 636401 TGATATG-CAGAATGGGCTGGTTGCCAGCGAGTGGGAATCTCTCCAGATACGCATCGAGT 636459 Query 5218 CCCTTATCACATCCCATTTGGTTCA 5242 || ||||| ||| | ||||| ||| Sbjct 636460 TCCCTATCATATCTCTTTTGGATCA 636484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40207612658320