Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq204 136 3e-28 >seq204 Length=231860 Score = 136 bits (150), Expect = 3e-28 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||| ||||| || || || | || | |||||||||| || |||| | Sbjct 104715 AGGAGGTTTGAGATGGATCGTGACCCATTGTATGGCCGATACTGTGCAGAATGTAGCAAA 104774 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 | ||| | ||||||||||||||||| ||||| || || |||||| |||| | || ||| Sbjct 104775 TTTCATGCAGCTGAGGAAGGTGACTTCTGGGCGGAATCCAGCATGCTGGGATTGAAGATC 104834 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||| |||||||||||||||| ||||| ||||||| Sbjct 104835 ACATACTTTGCCATGATGGATGGAAAGGTTTATGACATCACAG 104877 Score = 80.6 bits (88), Expect = 2e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||| |||||||| |||||| | ||||||||||| |||||||| || |||| || | || Sbjct 107859 CAGAATGGGCTGGTTGCCAGAGAGTGGGAATCTCTCCAGATACGCATCGAGTTCCCTATC 107918 Query 5241 ACATCTCATTTGGTTCA 5257 ||||||| ||||| ||| Sbjct 107919 ACATCTCTTTTGGATCA 107935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40105364177844