Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq663 96.9 2e-17 seq25996 95.1 7e-17 seq6019 86.0 4e-14 seq25952 82.4 4e-13 seq8279 80.6 2e-12 >seq663 Length=40635 Score = 96.9 bits (106), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||| ||||||||||||||||||||||||||||||| | | |||||| ||||||||||| Sbjct 20191 CTGTCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGCGCGCTCACGCTCCACCTCC 20250 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| || |||| || || |||||||||| Sbjct 20251 CCGACG-GGGCGGG-CG-AG-ACGGGCCGGT 20277 >seq25996 Length=554908 Score = 95.1 bits (104), Expect = 7e-17 Identities = 69/77 (90%), Gaps = 5/77 (6%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTA--ACGCATGCGCTCGTGCTCCACCT 894 ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| Sbjct 247353 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGCAT--GCTCATGCTCCACCT 247410 Query 895 CCCCGACGCGGTCGGGT 911 |||| ||| || ||||| Sbjct 247411 CCCCAACG-GGGCGGGT 247426 >seq6019 Length=17252 Score = 86.0 bits (94), Expect = 4e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||| Sbjct 8100 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGCGCGCTCACGCTCCACCTCC 8041 Query 897 CC 898 || Sbjct 8040 CC 8039 >seq25952 Length=264059 Score = 82.4 bits (90), Expect = 4e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||| | | | |||| ||||||||||| Sbjct 108694 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAGCACCCGTGCTCACGCTCCACCTCC 108753 Query 897 CCGACGCGGTCGG 909 | |||| ||| || Sbjct 108754 CAGACGGGGTGGG 108766 >seq8279 Length=12561 Score = 80.6 bits (88), Expect = 2e-12 Identities = 63/74 (85%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | ||| || ||| ||||||| Sbjct 10563 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAGCACGGGCGGTCACGCTTCACCTCC 10622 Query 897 CCGACGCGGTCGGG 910 |||| | || |||| Sbjct 10623 CCGATG-GGGCGGG 10635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859947893734