Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq13817 118 9e-23 >seq13817 Length=1211 Score = 118 bits (130), Expect = 9e-23 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||| |||||| ||||||||||| || | | || | || || || |||||||| | | Sbjct 348 AGGAAGTTTGAGATGGACCGGGATCCGCTGTGCGCTCGCTATTGCGCGGAGTGTAACAAG 289 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||| | | ||||| || || | ||||| ||||| |||||| |||||||||||||| Sbjct 288 AGGCACTCGGTCGAGGAGGGAGATCTGTGGGCCGAGTCCAGCATGCTGGGCCTCAAAATC 229 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||| || ||||||| || || ||||| || ||||||| Sbjct 228 ACCTACTTCGCCATGATGGACGGCAAAGTGTACGACATCACAG 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40201607819296