Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq20315 93.3 2e-16 seq3470 84.2 1e-13 >seq20315 Length=1015 Score = 93.3 bits (102), Expect = 2e-16 Identities = 80/93 (86%), Gaps = 7/93 (8%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTA--ACGCATGCGCTCGTGCTCCACCT 894 ||||||||||||||||||||||||||||||| | | ||||| ||||| |||||||||| Sbjct 190 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCACGCA--CGCTCCTGCTCCACCT 133 Query 895 CCCCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||||| | |||| || || |||||||||| Sbjct 132 CCCCGACGAGCGCGGG-CG-AG-ACGGGCCGGT 103 >seq3470 Length=6517 Score = 84.2 bits (92), Expect = 1e-13 Identities = 78/93 (84%), Gaps = 7/93 (8%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGT--CCTAACGCATGCGCTCGTGCTCCACCT 894 ||||||||||||||||||||||||||||||| | | ||||| ||||| |||||||||| Sbjct 3990 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCACGCA--CGCTCCTGCTCCACCT 4047 Query 895 CCCCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 || |||| | |||| || || |||||||||| Sbjct 4048 CCACGACAAGTGCGGG-CG-AG-ACGGGCCGGT 4077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860174439592