Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq2637 98.7 6e-18 seq177 96.9 2e-17 seq4126 95.1 7e-17 >seq2637 Length=283777 Score = 98.7 bits (108), Expect = 6e-18 Identities = 70/77 (91%), Gaps = 5/77 (6%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTA--ACGCATGCGCTCGTGCTCCACCT 894 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 211296 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCACGCA--CGCTCATGCTCCACCT 211239 Query 895 CCCCGACGCGGTCGGGT 911 ||||||||| | ||||| Sbjct 211238 CCCCGACGCTG-CGGGT 211223 >seq177 Length=2122538 Score = 96.9 bits (106), Expect = 2e-17 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| | | ||||||| |||| ||||||| Sbjct 1681000 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCACGTGCGCTCATGCTGCACCTCC 1681059 Query 897 CCGACGCGGTCGGGT 911 | ||||| | ||||| Sbjct 1681060 CTGACGCTG-CGGGT 1681073 >seq4126 Length=108736 Score = 95.1 bits (104), Expect = 7e-17 Identities = 69/77 (90%), Gaps = 5/77 (6%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTA--ACGCATGCGCTCGTGCTCCACCT 894 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 51033 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCACGCA--CGCTCATGCTCCACCT 50976 Query 895 CCCCGACGCGGTCGGGT 911 |||||| || | ||||| Sbjct 50975 CCCCGATGCTG-CGGGT 50960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860126793862