Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq16 95.1 7e-17 seq24957 89.7 3e-15 seq1971 86.0 4e-14 seq1484 75.2 6e-11 >seq16 Length=1685948 Score = 95.1 bits (104), Expect = 7e-17 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||||||| Sbjct 956203 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCAACACGTACGCTCTCGCTCCACCTCC 956262 Query 897 CCGACGC 903 ||||||| Sbjct 956263 CCGACGC 956269 >seq24957 Length=375254 Score = 89.7 bits (98), Expect = 3e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||| ||| | | ||||| ||||||||||| Sbjct 180624 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCCAACACGTACGCTCTCGCTCCACCTCC 180565 Query 897 CCGACGC 903 ||||||| Sbjct 180564 CCGACGC 180558 >seq1971 Length=50295 Score = 86.0 bits (94), Expect = 4e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||| Sbjct 45871 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCAACAGGTACGCTTTCGCTCCACCTCC 45812 Query 897 CCGACGC 903 ||||||| Sbjct 45811 CCGACGC 45805 >seq1484 Length=203870 Score = 75.2 bits (82), Expect = 6e-11 Identities = 58/68 (85%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTC-GTGCTCCACCTC 895 ||||||||| ||||||||||||||||||||||| ||| || ||||| ||||||||| Sbjct 49312 CTGCCCAGGTATAGTTCACCATCTTTCGGGTCCCAACACAAACGCTCTCAACTCCACCTC 49253 Query 896 CCCGACGC 903 || ||||| Sbjct 49252 CCTGACGC 49245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860062302490