Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq13458 104 1e-18 seq22976 98.7 6e-17 seq16433 98.7 6e-17 seq9755 98.7 6e-17 >seq13458 Length=41104 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13149 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 13090 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 13089 GTATTAGCTCT 13079 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 7711 GCCCGAGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCAC 7652 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 7651 GTATTAGCTCT 7641 Score = 89.7 bits (98), Expect = 3e-14 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 26828 TTGACCTTTTATCTAATAAATGCATCCCTTCAAGAAGTCAGGGTTTGTTGCACG 26775 >seq22976 Length=4458 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 218 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 217 GTATTAGCTCT 207 >seq16433 Length=43565 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 40468 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 40527 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 40528 GTATTAGCTCT 40538 >seq9755 Length=31666 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28358 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 28299 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 28298 GTATTAGCTCT 28288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28397860716588