Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq17927 118 4e-23 seq17884 86.0 2e-13 >seq17927 Length=56337 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||| |||||| |||||| || || | | ||| ||||| | ||||| |||| Sbjct 42096 TTTATGATACGATGCAATTTGTGCGCCCCGATGTACAGACAATATGCATGGGATTGGCCG 42037 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||| ||||||||||||| |||||||||| Sbjct 42036 CTTCAATAGCATCCTTTATCCTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCC 41979 >seq17884 Length=61832 Score = 86.0 bits (94), Expect = 2e-13 Identities = 74/93 (80%), Gaps = 8/93 (9%) Strand=Plus/Plus Query 28 CCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTC 87 ||||| ||| ||| ||||| | || |||||||| |||||||||||| |||||| Sbjct 7455 CCAGATGTCCACACAATATGCATGGGGTTAGCCGCCTCAATGGGATCTTTTATCC----- 7509 Query 88 GGAGGAGAAATTACCAAACGTCTAGCATTCCCG 120 |||||||||||||||||| ||||||||||| Sbjct 7510 ---GGAGAAATTACCAAACGTTTAGCATTCCCG 7539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19042585244160