Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq696 132 2e-27 seq2 132 2e-27 >seq696 Length=154923 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 71125 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 71066 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 71065 CTTCAATAGCATCCTTTATCCTGGTCGGAGGAGCAATTACCAAACGTATAGCATTCCC 71008 >seq2 Length=19320864 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 8765295 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 8765354 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 8765355 CTTCAATAGCATCCTTTATCCTGGTCGGAGGAGCAATTACCAAACGTATAGCATTCCC 8765412 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | ||||| |||| Sbjct 9172167 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCG 9172108 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 9172107 CTTCAATAGCATCCTTTATCCTGGTCGGAGGAGCAATTACCAAACGTATAGCATTCCC 9172050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046255009280