Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 7e-16 seq3 95.1 7e-16 >seq7 Length=24649197 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 15305364 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 15305305 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 15305304 GTATTAGCTCT 15305294 >seq3 Length=24464547 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24323483 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24323542 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24323543 GTATTAGCTCT 24323553 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24332873 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24332932 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24332933 GTATTAGCTCT 24332943 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24342354 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24342413 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24342414 GTATTAGCTCT 24342424 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24352980 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24353039 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24353040 GTATTAGCTCT 24353050 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24378543 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24378602 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24378603 GTATTAGCTCT 24378613 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24394934 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24394875 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24394874 GTATTAGCTCT 24394864 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24405844 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24405785 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24405784 GTATTAGCTCT 24405774 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24414682 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24414623 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24414622 GTATTAGCTCT 24414612 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 24434417 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24434358 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 24434357 GTATTAGCTCT 24434347 Score = 86.0 bits (94), Expect = 4e-13 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTG 8901 || || || |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 24385715 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTG 24385771 Score = 82.4 bits (90), Expect = 4e-12 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 8899 || || || |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 24385480 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGT 24385426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406177577888