Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_033774.1
Length=8913
Score E
Sequences producing significant alignments: (Bits) Value
seq7 95.1 7e-16
seq3 95.1 7e-16
>seq7
Length=24649197
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 15305364 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 15305305
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 15305304 GTATTAGCTCT 15305294
>seq3
Length=24464547
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24323483 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24323542
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24323543 GTATTAGCTCT 24323553
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24332873 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24332932
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24332933 GTATTAGCTCT 24332943
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24342354 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24342413
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24342414 GTATTAGCTCT 24342424
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24352980 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24353039
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24353040 GTATTAGCTCT 24353050
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24378543 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24378602
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24378603 GTATTAGCTCT 24378613
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24394934 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24394875
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24394874 GTATTAGCTCT 24394864
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24405844 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24405785
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24405784 GTATTAGCTCT 24405774
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24414682 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24414623
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24414622 GTATTAGCTCT 24414612
Score = 95.1 bits (104), Expect = 7e-16
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 24434417 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTGCAC 24434358
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 24434357 GTATTAGCTCT 24434347
Score = 86.0 bits (94), Expect = 4e-13
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTG 8901
|| || || |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 24385715 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGTTG 24385771
Score = 82.4 bits (90), Expect = 4e-12
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 8899
|| || || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 24385480 GCCCGCGTCGACCTTTTATCTAATAAATGCACCCCTTCCAGAAGTCGGGGTTTGT 24385426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28406177577888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |